Salinivibrio sp.YH4胞外丝氨酸蛋白酶EYHS耐盐性及生物信息学分析          下载免费PDF全文

武翠玲  宋英达  高慧芳  张廉芸  任晨霞 《盐湖研究》2020,28(1)

摘要：目的 探讨菌株Salinivibrio sp.YH4分泌的丝氨酸蛋白酶EYHS的耐盐性及结构特征。方法 明胶底物酶谱法分析EYHS的耐盐性。应用生物信息学手段对EYHS及6种耐盐的S8家族丝氨酸蛋白酶结构特征进行分析。结果 EYHS在4 mol/L的NaCl溶液中仍具有活性，属于耐盐蛋白酶。EYHS及6种S8家族丝氨酸蛋白酶分子表面的loop区等无规则卷曲所占比例较高，α-螺旋与β-片层则主要位于酶分子内部。EYHS分子表面酸性氨基酸含量较高，且具有弱疏水内核。多序列比对发现蛋白酶的催化三联体两侧存在高度保守的基序和保守的极性氨基酸及芳香族氨基酸，并存在多个保守的Gly与Ala。同源模建和表面电荷分布显示，α螺旋和β片层围成了蛋白酶的催化腔，EYHS活性中心包含由Asp32、His65与Ser215组成的催化三联体，且催化位点区域表面静电势为负。结论 上述结构特征可能有助于耐盐丝氨酸蛋白酶EYHS在高盐环境下维持其稳定性和适度柔性，并有助于其催化功能的发挥，为深入研究耐盐丝氨酸蛋白酶的高盐环境适应性提供了一定的理论依据。  相似文献   

城镇化与生态环境耦合的动态模拟——研究进展与展望     

崔学刚  方创琳  刘海猛  刘晓菲  李咏红 《地理学报(英文版)》2020,30(2):333-352

Urbanization and eco-environment coupling is a research hotspot.Dynamic simulation of urbanization and eco-environment coupling needs to be improved because the processes of coupling are complex and statistical methods are limited.Systems science and cross-scale coupling allow us to define the coupled urbanization and eco-environment system as an open complex giant system with multiple feedback loops.We review the current state of dynamic simulation of urbanization and eco-environment coupling and find that:(1)The use of dynamic simulation is an increasing trend,the relevant theory is being developed,and modeling processes are being improved;(2)Dynamic simulation technology has become diversified,refined,intelligent and integrated;(3)Simulation is mainly performed for three aspects of the coupling,multiple regions and multiple elements,local coupling and telecoupling,and regional synergy.However,we also found some shortcomings:(1)Basic theories are inadequately developed and insufficiently integrated;(2)The methods of unifying systems and sharing data are behind the times;(3)Coupling relations and the dynamic characteristics of the main driving elements are not fully understood or completely identified.Additionally,simulation of telecoupling does not quantify parameters and is not systemically unified,and therefore cannot be used to represent spatial synergy.In the future,we must promote communication between research networks,technology integration and data sharing to identify the processes governing change in coupled relations and in the main driving elements in urban agglomerations.Finally,we must build decision support systems to plan and ensure regional sustainable urbanization.  相似文献   

阿拉尔河悬浮物对铀的吸附影响研究          下载免费PDF全文

钟翼  许建新  韩积斌  徐凯 《盐湖研究》2020,28(1):112-122

为了解阿拉尔河悬浮物对铀的吸附特性,通过静态吸附实验,研究了吸附时间、pH值、温度和铀初始浓度等因素对模拟含铀水中U(VI)去除率的影响,并从热力学和动力学方面对吸附过程进行了分析。结果表明,在T=25℃,溶液初始pH=7,接触时间为16 h时,悬浮物对铀的平衡吸附率最佳,为95.48%。随着铀初始浓度的增加,吸附量增加,但吸附率随之下降,升高温度有利于铀的吸附。铀在悬浮物上的吸附过程符合Langmuir等温吸附方程,说明悬浮物对铀为单分子层吸附,且化学吸附占主导地位。吸附动力学过程可用准二级吸附动力学模型描述,表明吸附主要受动力学控制,由两个以上步骤共同控制。FTIR和EDS分析结果表明,吸附过程中铀主要与悬浮物表面活性基团螯合并以表面络合吸附为主。吸附前后的能谱对比分析表明,吸附过程中存在离子交换行为。因此,悬浮物对铀的吸附机理是以表面络合吸附和离子交换为主、物理吸附为辅的混合吸附过程。  相似文献   

南海北部海域油气资源调查技术及其应用研究——震源子波检测及模拟分析          下载免费PDF全文

曾宪军  翟继锋  韦成龙 《海洋技术学报》2019,38(2)

在野外采集中考察气枪的稳定性以及室内进行确定性子波反褶积处理,都要求能够获得气枪阵列的实时远场子波。从震源子波检测方法出发,阐述了近场子波采集、幅值转换及记录流程,并列举出实测近场子波时需要考虑解决的问题;接着介绍了震源远场子波的获取方法和主要途径;震源近场子波及远场子波的实测方案,检测震源子波所需的仪器设备和采集技术方法。文中分析了气枪子波的气泡干扰问题,虚反射与后续气泡震荡间的关系以及吸收衰减对子波的影响,并根据实测远场子波,对齐氏和范氏两种气体模型进行了模拟效果对比,结果表明:采用范氏气体模型所模拟的子波与实际子波更为吻合,模拟出的气枪的子波波形、振幅大小、气泡周期上,与业界通用的Nucleus软件的模拟结果吻合较好,在后续的使用中将继续优化。  相似文献   

Faecal indicator bacteria in New Zealand freshwater fish: a pilot study     

Sarah Coxon  Jon S Harding  Brent Gilpin 《新西兰海洋与淡水研究杂志》2019,53(3):470-479

Recent studies have suggested that poikilothermic animals, such as fish, may represent a previously overlooked source of the faecal indicator bacteria (FIB) used for the assessment of water quality. However, quantitative studies of FIB in poikilotherms are scarce. We investigated the presence of FIB in the faeces of five freshwater fish species. E. coli and enterococci were detected in 71 and 76% of faecal samples, respectively. Concentrations were highly variable, with maximum concentrations (2.1?×?10⁴ E. coli and 1.3?×?10⁶ enterococci per gram of faecal material) up to four orders of magnitude higher than present in the water column. FIB were not detected in faecal samples from marine fish. Our findings suggest that FIB ingested from the environment may be capable of replication within the fish gut, making fish a potential source and transport mechanism for FIB in New Zealand freshwaters. This may have implications for water quality monitoring.  相似文献   

Developing constitutive models from EPR‐based self‐learning finite element analysis          下载免费PDF全文

Ali Nassr  Akbar Javadi  Asaad Faramarzi 《国际地质力学数值与分析法杂志》2018,42(3):401-417

A constitutive model that captures the material behavior under a wide range of loading conditions is essential for simulating complex boundary value problems. In recent years, some attempts have been made to develop constitutive models for finite element analysis using self‐learning simulation (SelfSim). Self‐learning simulation is an inverse analysis technique that extracts material behavior from some boundary measurements (eg, load and displacement). In the heart of the self‐learning framework is a neural network which is used to train and develop a constitutive model that represents the material behavior. It is generally known that neural networks suffer from a number of drawbacks. This paper utilizes evolutionary polynomial regression (EPR) in the framework of SelfSim within an automation process which is coded in Matlab environment. EPR is a hybrid data mining technique that uses a combination of a genetic algorithm and the least square method to search for mathematical equations to represent the behavior of a system. Two strategies of material modeling have been considered in the SelfSim‐based finite element analysis. These include a total stress‐strain strategy applied to analysis of a truss structure using synthetic measurement data and an incremental stress‐strain strategy applied to simulation of triaxial tests using experimental data. The results show that effective and accurate constitutive models can be developed from the proposed EPR‐based self‐learning finite element method. The EPR‐based self‐learning FEM can provide accurate predictions to engineering problems. The main advantages of using EPR over neural network are highlighted.  相似文献   

Numerical study for vegetation effects on coastal wave propagation by using nonlinear Boussinesq model     

《Applied Ocean Research》2018

The vegetation has important impacts on coastal wave propagation. In the paper, the sensitivities of coastal wave attenuation due to vegetation to incident wave height, wave period and water depth, as well as vegetation configurations are numerically studied by using the fully nonlinear Boussinesq model. The model is based on the implementation of drag resistances due to vegetation in the fully nonlinear Boussinesq equation where the drag resistance is provided by the Morison’s formulation for rigid structure induced drag stresses. The model is firstly validated by comparing with the experimental results for wave propagation in vegetation zones. Subsequently, the model is used to simulate waves with different height, period propagating on vegetation zones with different water depth and vegetation configurations. The sensitivities of wave attenuation to incident wave height, wave period, water depth, as well as vegetation configurations are investigated based on the numerical results. The numerical results indicate that wave height attenuation due to vegetation is sensitive to incident wave height, wave period, water depth, as well as vegetation configurations, and attenuation ratio of wave height is increased monotonically with increases of incident wave height and decreases of water depth, while it is complex for wave period. Moreover, more vegetation segments can strengthen the interaction of vegetation and wave in a certain range.  相似文献   

鄂尔多斯盆地宜川地区二叠纪孢粉化石组合特征          下载免费PDF全文

高存山 《山东国土资源》2018,34(11)

通过对延长油矿延223井晚古生代孢粉组合研究以及古植被的恢复,探讨了该区晚古生代孢粉植物化石组合的地层学和古气候意义。根据孢粉化石主要属种的时代分布及其在各样品中百分含量的规律性变化,自下而上建立了3个孢粉组合:Gulisporites cochlearius-Laevigatosporites minimus组合、Sinulatisporites-Florinites组合和Lueckeisporites permianus-Platysaccus radialis组合。根据对划分孢粉组合的特征分析,通过与邻区及华北地区晚古生代孢粉组合的对比,探讨了孢粉组合的时代意义。通过孢粉组合,推测了相应时期的古植被类型,并与前人在相同地质时期所建立的大植物化石带进行了对比,分析了各地质时期植被的兴起、发展、繁盛以及衰退绝灭的历史过程,研究区二叠纪植物群属于典型的华夏植物群,反映了一种温暖潮湿的热带雨林气候,二叠纪晚期随着松柏类植物所占比例的增加,气候有变干旱的趋势。  相似文献   

典型深街谷内树木空间配置对行人呼吸高度处气流的影响     

林定  申小云  朱勇兵  陈崇成 《地球信息科学学报》2018,20(9):1235-1243

为揭示树木的不同空间配植方案对行人呼吸高度气流的影响,本文将树木视为均匀多孔介质,通过附加源项法从空气动力学角度用CFD模拟了H/W=2的典型深街谷几何内4种树木配植情景,实验表明,不同空间配置下树木对街谷内行人呼吸高度处局地气流的影响强弱在空间分布模式上差异悬殊：① 均匀种植的树木对街谷内行人呼吸高度的气流起到阻碍作用,不均匀种植则有效提升街谷的整体流速。4种空间配植方案下树木对气流的影响程度不同,阻碍作用从大到小的顺序为均匀间距8 m（Spa8m）>均匀间距6 m（Spa6m）>均匀间距20 m（Spa20m）>不均匀配植（Non-uniform）;对应的平均气流增强指标顺序为$\bar{D}_{spa8}$（-19.31%）<$\bar{D}_{spa6}$（-16.14%）<$\bar{D}_{spa20}$（-10.73%）<$\bar{D}_{non-uniform}$（1.25%）。② 对比不均匀和均匀的种植方案,不均匀植树的街谷内部行人呼吸高度的气流流速比其对照案例（均匀植树Spa8m方案）整体增强了106.49%。街谷中部不种树,在街谷两端配置树木并预留足够的自由空间的不均匀植树方案,能够让角涡渗入街谷中部,促使街谷内部的垂直漩涡和两端的水平角涡运动,增强湍流和垂直交换,有效减少了街道两端“风口效应”和街道中部“风影效应”的区域,改善了整个街谷行人呼吸平面的风环境。④ 合理空间配置的树木能够改善街谷内部的行人风环境。街谷内行人呼吸高度处的气流对局地条件很敏感,树木的局部配置（空间簇集、密度）将引起强烈的空间变化。在既有城市建筑布局条件下,如何通过谨慎的景观设计,利用树木等城市绿化措施有效地改善城市的行人风环境,缓解污染扩散、疾病传播等问题,本文的方法可提供一定的参考。  相似文献   

Bearing capacity of offshore umbrella suction anchor foundation in silty soil under varying loading modes     

Qi Yang  Guanglai Pan  Quandi Wang 《Marine Georesources & Geotechnology》2018,36(7):781-794

Considering the current disadvantages of present offshore wind turbine foundations, a novel anchor foundation with skirt and branches is proposed, called offshore umbrella suction anchor foundation (USAF). A series of experiments and numerical simulations were performed to explore the bearing capacity of the USAF under various kinds of loading modes. The bearing characteristics and the anchor–soil interactions are described in detail for horizontal static loading, horizontal cyclic loading, and an antidrawing (pullout) test in silty soil. In the static loading test, the load–deflection of the anchor under step loading was analyzed and the normalized curve of the load–deflection was obtained to determine the ultimate horizontal bearing capacity of the anchor under normal working conditions. Under horizontal cyclic loading, the relationship between the plastic cumulative deformation and cyclic number was determined. In addition, the responses of USAF were investigated for a low wave frequency and storm surges. In the drawing test, it was found that a “segmentation phenomenon” occurred during the test. Moreover, a method to identify the maximum antidrawing load of USAF was provided based on dynamic mechanics. The numerical results show that the use of anchor branches and skirt can enhance the bearing performance of USAF to a certain degree. However, the anchor branch has a slight positive influence on the bearing performance improvement. The USAF is not only similar to a stiff short pile, but a rotation occurs. The failure envelope under composite loading (V-M) was obtained and the changes associated with changes in the aspect ratio of the internal compartment were clarified.  相似文献